MIAPA: Difference between revisions
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'''Active projects''' | '''Active projects''' | ||
* Elliott Hauser's 2012 Google Summer of Code project "[http://informatics.nescent.org/wiki/PhyloSoC:_NeXML_to_MIAPA_mapping NeXML to MIAPA mapping]" | * Elliott Hauser's 2012 Google Summer of Code project "[http://informatics.nescent.org/wiki/PhyloSoC:_NeXML_to_MIAPA_mapping NeXML to MIAPA mapping]" | ||
* Emily McTavish's [https://docs.google.com/a/utexas.edu/spreadsheet/ccc?key=0Av6YLPeop2n0dGZiMjNGS2NleWNvQlVSeThVQXdSdmc#gid=0 Tree Annotation Vocabulary] as resulting from the [[Phylotastic I]] hackathon. Includes a mapping to MIAPA draft checklist attributes. | |||
* [http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/MIAPAWorkshop2011 Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard] workshop at TDWG 2011 | * [http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/MIAPAWorkshop2011 Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard] workshop at TDWG 2011 | ||
** This workshop produced a [http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/MIAPADraft#Community_survey checklist of metadata elements] for a proposed community survey. | ** This workshop produced a [http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/MIAPADraft#Community_survey checklist of metadata elements] for a proposed community survey. | ||
Revision as of 19:26, 28 January 2013
This serves as a web home and central hub for resources related to developing and deploying a Minimal Information for a Phylogenetic Analysis (MIAPA) standard.
Links
Active projects
- Elliott Hauser's 2012 Google Summer of Code project "NeXML to MIAPA mapping"
- Emily McTavish's Tree Annotation Vocabulary as resulting from the Phylotastic I hackathon. Includes a mapping to MIAPA draft checklist attributes.
- Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard workshop at TDWG 2011
- This workshop produced a checklist of metadata elements for a proposed community survey.
- MIAPA Draft RFC
- Plan for a PhyloRelevantLiteratureSurvey
- Conference Plan 2011
- Tree Best Practices, article in progress for BMC, based largely on TDWG report
- MIAPA Survey on barriers to re-use of phylogenies and associated data and metadata
- Reuse Cases
- Barriers to reuse -- from user stories collected by the survey team
- Reuse Barriers -- Hilmar's list regarding TreeBASE submissions
- MIAPA Demonstration Project in the Leebens-Mack lab, spring 2011
- The PhyloWays list of reference workflow annotations (papers with extracted workflow information)
Resources
- There is an email list for discussion of MIAPA. Please consider joining if you would like to play an active role in developing and supporting a minimal-information checklist for phylogenetic studies.
- MIAPA white paper at NESCent
- Arlin's proof-of-concept and an idea for a knowledge-capture experiment
- Leebens-Mack et al (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS: a Journal of Integrative Biology 10 (2): 231-7. doi:10.1089/omi.2006.10.231.