Hilmar: Redirected page to Phylotastic/Participants#Skills table

2012-06-10T17:38:05Z

Redirected page to Phylotastic/Participants#Skills table

New page

#REDIRECT [[Phylotastic/Participants#Skills table]]

Hilmar at 22:42, 14 May 2012

2012-05-14T22:42:29Z

← Older revision		Revision as of 22:42, 14 May 2012
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	* '''WS''' (web service interfaces): you can design and implement interfaces to wrap existing tools		* '''WS''' (web service interfaces): you can design and implement interfaces to wrap existing tools
	* '''other''' (something else): you can contribute to this project in ways we haven't imagined yet		* '''other''' (something else): you can contribute to this project in ways we haven't imagined yet

			[[Category:Phylotastic]]

Hilmar at 22:42, 14 May 2012

2012-05-14T22:42:08Z

← Older revision		Revision as of 22:42, 14 May 2012
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	\| \| [[Image:mark_holder_face.jpg\|50px\|Mark Holder]]\|\| ! scope=row colspan=14 style="background:#f0f0f0"\| '''Comments:'''		\| \| [[Image:mark_holder_face.jpg\|50px\|Mark Holder]]\|\| ! scope=row colspan=14 style="background:#f0f0f0"\| '''Comments:'''
			\|-
			\| scope=row colspan=15 style="border-bottom:2px solid gray;"\|
			\|-
			\| \| [[User:Hilmar\|Hilmar Lapp]]\|\| tree \|\| \|\| \|\| viz \|\| flow \|\| \|\| \|\| NeX \|\| mash \|\| \|\| \|\| WS \|\| \|\|
			\|-
			\| \| [[Image:Hilmar.jpg\|50px\|Participant Picture]]\|\| ! scope=row colspan=14 style="background:#f0f0f0"\| '''Comments:''' I am interested in interoperability and reuse of software and data, and have considerable experience in data and metadata modeling, software architecture, and API design for reuse.
	\|-		\|-
	\| scope=row colspan=15 style="border-bottom:2px solid gray;"\|		\| scope=row colspan=15 style="border-bottom:2px solid gray;"\|
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	\| scope=row colspan=15 style="border-bottom:2px solid gray;"\|		\| scope=row colspan=15 style="border-bottom:2px solid gray;"\|
	\|-		\|-
	\| \| [[emily_jane_mctavish\|Emily Jane McTavish]]\|\|tree\|\|prov\|\|scale\|\|\|\|\|\|doc\|\|graft\|\|\|\|\|\|tnrs\|\|use\|\|\|\|other\|\|		\| \| [[emily_jane_mctavish\|Emily Jane McTavish]]\|\|tree\|\|prov\|\|scale\|\|\|\|\|\|doc\|\|graft\|\|\|\|\|\|tnrs\|\|use\|\|\|\|other\|\|
	\|-		\|-

Hilmar: moved Skills table to Phylotastic/Skills table

2012-05-14T21:53:32Z

moved Skills table to Phylotastic/Skills table

New page

For column descriptions hover over them (or see end of the page). For more info about participants, refer to [[PhylotasticParticipants|this page]].

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Participant'''
| align="center" style="background:#f0f0f0;"|'''tree'''
| align="center" style="background:#f0f0f0;"|'''prov'''
| align="center" style="background:#f0f0f0;"|'''scale'''
| align="center" style="background:#f0f0f0;"|'''viz'''
| align="center" style="background:#f0f0f0;"|'''flow'''
| align="center" style="background:#f0f0f0;"|'''doc'''
| align="center" style="background:#f0f0f0;"|'''grft'''
| align="center" style="background:#f0f0f0;"|'''NeX'''
| align="center" style="background:#f0f0f0;"|'''mash'''
| align="center" style="background:#f0f0f0;"|'''tnrs'''
| align="center" style="background:#f0f0f0;"|'''use'''
| align="center" style="background:#f0f0f0;"|'''WS'''
| align="center" style="background:#f0f0f0;"|'''other'''
| align="center" style="background:#f0f0f0;"|'''Describe Other'''
|-
| | [[jim_balhoff|Jim Balhoff]]||||prov||||||flow||||||NeX||mash||||||WS||||
|-
| | [[Image:jim_balhoff_face.jpg|50px|Jim Balhoff]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[holly_bik|Holly Bik]]||||||||viz||flow||doc||graft||||||||use||||other||
|-
| | [[Image:holly_bik_face.jpg|50px|Holly Bik]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[mark_holder|Mark Holder]]||||||||||flow||||graft||NeX||||||||WS||||
|-
| | [[Image:mark_holder_face.jpg|50px|Mark Holder]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[naim_matasci|Naim Matasci]]||tree||||||viz||flow||doc||graft||||||tnrs||||||||
|-
| | [[Image:naim_matasci_face.jpg|50px|Naim Matasci]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[siavash_mirarab|Siavash Mirarab]]||||||scale||||flow||||graft||||||tnrs||||WS||||
|-
| | [[Image:siavash_mirarab_face.jpg|50px|Siavash Mirarab]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:''' I am interested in TNRS, but have little experience with it. I am familiar with gene duplication concepts, so I can help with the reconciliation use case (if included). I work on meta-genomics, so I can help with a meta-genomic use case.
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[megan_pirrung|Megan Pirrung]]||||||||viz||flow||||||||||||||WS||other||
|-
| | [[Image:megan_pirrung_face.jpg|50px|Megan Pirrung]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[rick_ree|Rick Ree]]||tree||prov||scale||viz||flow||doc||graft||||||tnrs||use||WS||||
|-
| | [[Image:rick_ree_face.jpg|50px|Rick Ree]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[aaron_steele|Aaron Steele]]||tree||prov||||viz||flow||doc||||||mash||tnrs||||WS||||
|-
| | [[Image:aaron_steele_face.jpg|50px|Aaron Steele]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[jeet_sukumaran|Jeet Sukumaran]]||tree||prov||scale||||flow||||||NeX||mash||||||||||
|-
| | [[Image:jeet_sukumaran_face.jpg|50px|Jeet Sukumaran]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[gaurav_vaidya|Gaurav Vaidya]]||||||||||flow||||||||mash||tnrs||||WS||other||
|-
| | [[Image:gaurav_vaidya_face.jpg|50px|Gaurav Vaidya]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[James_estill|Jamie Estill]]||tree||||||||||||graft||NeX||||||||||||
|-
| | [[Image:James_estill_face.jpg|50px|Jamie Estill]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[Helena_deus|Helena Deus]]||||prov||||viz||flow||doc||||||mash||tnrs||||WS||other||
|-
| | [[Image:Helena_deus.jpg|50px|Helena Deus]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[emily_jane_mctavish|Emily Jane McTavish]]||tree||prov||scale||||||doc||graft||||||tnrs||use||||other||
|-
| | [[Image:emily_jane_mctavish_face.jpg|50px|Emily Jane McTavish]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:''' My background is phylogenetics, and some bioinformatics. I'm most comfortable with python, fine with SQL, knew C++ and could probably remember if pressed. I'm particularly interested in how to incorporate uncertainty from source trees into phylotastic output, and make it handy without being dangerously blackboxy.
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[peter_midford|Peter Midford]]||||||||||||||graft||NeX||||tnrs||||||other||
|-
| | [[Image:peter_midford_face.jpg|50px|Peter Midford]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[tracy_heath|Tracy Heath]]||||||scale||||||doc||graft||||||tnrs||||||||
|-
| | [[Image:tracy_heath_face.jpg|50px|Tracy Heath]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[ben_vandervalk|Ben Vandervalk]]||||||||||flow||||||||mash||||||WS||||
|-
| | [[Image:ben_vandervalk_face.jpg|50px|Ben Vandervalk]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[cam_webb|Cam Webb]]||tree||||scale||viz||flow||doc||graft||NeX||mash||tnrs||use||WS||||
|-
| | [[Image:cam_webb_face.jpg|50px|Cam Webb]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[christian_m_zmasek|Christian M. Zmasek]]||tree||||||viz||flow||||graft||||mash||tnrs||||||||
|-
| | [[Image:christian_m_zmasek_face.jpg|50px|Christian M. Zmasek]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
| | [[participant_page|Participant Name]]|| tree|| prov||scale ||viz|| flow||doc ||graft || NeX|| mash||tnrs||use||WS||other||
|-
| | [[Image:participant_name_face.jpg|50px|Participant Picture]]|| ! scope=row colspan=14 style="background:#f0f0f0"| '''Comments:'''
|-
| scope=row colspan=15 style="border-bottom:2px solid gray;"|
|-
|
|}

== Column Names and Descriptions ==
* '''tree''' (back-end trees): you know where to get large trees (>1K species) and make them available via some data store
* '''prov''' (provenance annotation): you can use metadata to keep track of where results came from
* '''scale''' (branch length): estimation: you can adapt tools that estimate missing branch lengths on species trees
* '''viz''' (visualization): you can adapt an existing phylogeny visualization tool for new inputs and capabilities
* '''flow''' (workflows): you can assemble web services (or other resources) into an executable workflow
* '''doc''' (documentation): you can make screencasts and write clear how-to documents
* '''grft''' (grafting & pruning): you can implement algorithms for grafting and pruning input trees to create a synthetic tree
* '''Nex''' (NeXML spec): you can help expand the NeXML spec to cover the Phylotastic use-case
* '''mash''' (semantic integration, mashups): you can write tools to discover, collect and integrate online data
* '''TNRS''' (taxonomic name resolution): you can use and adapt tools to map one set of names to another
* '''use''' (use-case expert): you know a real pruning-grafting-integration problem that can be used to test Phylotastic
* '''WS''' (web service interfaces): you can design and implement interfaces to wrap existing tools
* '''other''' (something else): you can contribute to this project in ways we haven't imagined yet

Phylotastic/Skills table - Revision history

Hilmar: Redirected page to Phylotastic/Participants#Skills table

Hilmar at 22:42, 14 May 2012

Hilmar at 22:42, 14 May 2012

Hilmar: moved Skills table to Phylotastic/Skills table